IL_6XIQ_152

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_152 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.2103

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6XIQ|1|2|A|550
6XIQ|1|2|G|551
6XIQ|1|2|G|552
6XIQ|1|2|G|553
6XIQ|1|2|C|554
6XIQ|1|2|A|555
6XIQ|1|2|A|556
6XIQ|1|2|G|557
*
6XIQ|1|2|C|587
6XIQ|1|2|U|588

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AU

40S ribosomal protein S30-A

Chain s

RPS2 isoform 1

Chain z

40S ribosomal protein S9-A