IL_6XIQ_160
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- 6XIQ|1|2|A|803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_160 not in the Motif Atlas
- Geometric match to IL_7RQB_073
- Geometric discrepancy: 0.2219
- The information below is about IL_7RQB_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6XIQ|1|2|A|746
6XIQ|1|2|C|747
*
6XIQ|1|2|G|802
6XIQ|1|2|A|803
6XIQ|1|2|A|804
6XIQ|1|2|U|805
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S11-A
- Chain AM
- RPS22A isoform 1
- Chain AN
- 40S ribosomal protein S23-A
- Chain x
- 40S ribosomal protein S7-A
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