IL_6XIQ_161
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUUU*AUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_161 not in the Motif Atlas
- Geometric match to IL_4K27_002
- Geometric discrepancy: 0.3545
- The information below is about IL_4K27_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
6XIQ|1|2|C|747
6XIQ|1|2|U|748
6XIQ|1|2|U|749
6XIQ|1|2|U|750
*
6XIQ|1|2|A|799
6XIQ|1|2|U|800
6XIQ|1|2|G|801
6XIQ|1|2|G|802
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S11-A
- Chain AM
- RPS22A isoform 1
- Chain AN
- 40S ribosomal protein S23-A
- Chain u
- 40S ribosomal protein S4-A
- Chain x
- 40S ribosomal protein S7-A
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