IL_6XIQ_175

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_175 not in the Motif Atlas

Geometric match to IL_6CZR_146

Geometric discrepancy: 0.28

The information below is about IL_6CZR_146

Detailed Annotation

9x7 Sarcin-Ricin with inserted C; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_68633.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6XIQ|1|2|G|1111
6XIQ|1|2|G|1112
6XIQ|1|2|A|1113
6XIQ|1|2|G|1114
6XIQ|1|2|U|1115
6XIQ|1|2|A|1116
6XIQ|1|2|U|1117
6XIQ|1|2|G|1118
6XIQ|1|2|G|1119
*
6XIQ|1|2|C|1128
6XIQ|1|2|U|1129
6XIQ|1|2|G|1130
6XIQ|1|2|A|1131
6XIQ|1|2|A|1132
6XIQ|1|2|A|1133
6XIQ|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AN

40S ribosomal protein S23-A

Chain n

RPL41A isoform 1