IL_6XIQ_201
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6XIQ|1|2|A|1755, 6XIQ|1|2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_201 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.5702
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XIQ|1|2|C|1644
6XIQ|1|2|G|1645
6XIQ|1|2|C|1646
6XIQ|1|2|U|1647
*
6XIQ|1|2|A|1753
6XIQ|1|2|A|1754
6XIQ|1|2|A|1755
6XIQ|1|2|A|1756
6XIQ|1|2|G|1757
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AN
- 40S ribosomal protein S23-A
- Chain AU
- 40S ribosomal protein S30-A
- Chain AY
- mRNA
- Chain AZ
- Transfer RNA; tRNA
- Chain n
- RPL41A isoform 1
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