3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UUG*UA
Length
5 nucleotides
Bulged bases
6XIQ|1|2|U|1657
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XIQ_204 not in the Motif Atlas
Homologous match to IL_4V88_469
Geometric discrepancy: 0.2449
The information below is about IL_4V88_469
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6XIQ|1|2|U|1656
6XIQ|1|2|U|1657
6XIQ|1|2|G|1658
*
6XIQ|1|2|U|1743
6XIQ|1|2|A|1744

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain AN
40S ribosomal protein S23-A
Chain V
60S ribosomal protein L23-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0887 s