IL_6XIQ_206

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIQ_206 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.2809

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6XIQ|1|2|U|1669
6XIQ|1|2|G|1670
6XIQ|1|2|A|1671
6XIQ|1|2|G|1672
*
6XIQ|1|2|C|1729
6XIQ|1|2|A|1730
6XIQ|1|2|A|1731
6XIQ|1|2|A|1732

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

RPL24A isoform 1

Chain w

40S ribosomal protein S6-A

Chain y

RPS8A isoform 1