3D structure

PDB id
6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CU*AAG
Length
5 nucleotides
Bulged bases
6XIQ|1|3|A|64
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XIQ_213 not in the Motif Atlas
Homologous match to IL_5TBW_372
Geometric discrepancy: 0.1174
The information below is about IL_5TBW_372
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

6XIQ|1|3|C|15
6XIQ|1|3|U|16
*
6XIQ|1|3|A|63
6XIQ|1|3|A|64
6XIQ|1|3|G|65

Current chains

Chain 3
5S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain D
RPL5 isoform 1
Chain I
RPL10 isoform 1
Chain J
RPL11B isoform 1

Coloring options:


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