IL_6XIQ_263
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6XIQ|1|2|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIQ_263 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.5539
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6XIQ|1|2|G|751
6XIQ|1|2|A|752
6XIQ|1|2|A|753
6XIQ|1|2|A|754
6XIQ|1|2|A|755
6XIQ|1|2|A|756
6XIQ|1|2|A|757
6XIQ|1|2|U|758
6XIQ|1|2|U|759
*
6XIQ|1|2|A|791
6XIQ|1|2|U|792
6XIQ|1|2|A|793
6XIQ|1|2|U|794
6XIQ|1|2|U|795
6XIQ|1|2|A|796
6XIQ|1|2|G|797
6XIQ|1|2|C|798
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S11-A
- Chain AM
- RPS22A isoform 1
- Chain u
- 40S ribosomal protein S4-A
- Chain z
- 40S ribosomal protein S9-A
Coloring options: