IL_6XIR_002
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 6XIR|1|4|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_002 not in the Motif Atlas
- Homologous match to IL_8C3A_002
- Geometric discrepancy: 0.1294
- The information below is about IL_8C3A_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
6XIR|1|1|C|7
6XIR|1|1|C|8
*
6XIR|1|4|G|150
6XIR|1|4|C|151
6XIR|1|4|G|152
Current chains
- Chain 1
- 35S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain G
- RPL8A isoform 1
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
Coloring options: