IL_6XIR_002

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6XIR|1|4|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_002 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.1294

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6XIR|1|1|C|7
6XIR|1|1|C|8
*
6XIR|1|4|G|150
6XIR|1|4|C|151
6XIR|1|4|G|152

Current chains

Chain 1

35S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain G

RPL8A isoform 1

Chain N

60S ribosomal protein L15-A

Chain X

60S ribosomal protein L25