IL_6XIR_025

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_025 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1054

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6XIR|1|1|G|725
6XIR|1|1|G|726
6XIR|1|1|G|727
6XIR|1|1|G|728
*
6XIR|1|1|U|741
6XIR|1|1|G|742
6XIR|1|1|C|743
6XIR|1|1|A|744
6XIR|1|1|C|745

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L18-A

Chain b

RPL29 isoform 1