IL_6XIR_042
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6XIR|1|1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_042 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1664
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6XIR|1|1|G|999
6XIR|1|1|C|1000
6XIR|1|1|G|1001
6XIR|1|1|A|1002
6XIR|1|1|A|1003
6XIR|1|1|U|1004
*
6XIR|1|1|A|1046
6XIR|1|1|A|1047
6XIR|1|1|A|1048
6XIR|1|1|C|1049
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D
- RPL5 isoform 1
- Chain I
- RPL10 isoform 1
- Chain T
- 60S ribosomal protein L21-A
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