IL_6XIR_054
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6XIR|1|1|C|1196, 6XIR|1|1|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_054 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1103
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6XIR|1|1|G|1194
6XIR|1|1|A|1195
6XIR|1|1|C|1196
6XIR|1|1|A|1197
6XIR|1|1|C|1198
6XIR|1|1|C|1199
6XIR|1|1|A|1200
6XIR|1|1|C|1201
6XIR|1|1|A|1202
6XIR|1|1|A|1203
6XIR|1|1|A|1204
6XIR|1|1|A|1205
*
6XIR|1|1|U|1299
6XIR|1|1|G|1300
6XIR|1|1|A|1301
6XIR|1|1|A|1302
6XIR|1|1|A|1303
6XIR|1|1|A|1304
6XIR|1|1|U|1305
6XIR|1|1|G|1306
6XIR|1|1|G|1307
6XIR|1|1|A|1308
6XIR|1|1|U|1309
6XIR|1|1|G|1310
6XIR|1|1|G|1311
6XIR|1|1|C|1312
6XIR|1|1|G|1313
6XIR|1|1|C|1314
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain B
- RPL3 isoform 1
- Chain F
- 60S ribosomal protein L7-A
- Chain I
- RPL10 isoform 1
- Chain O
- 60S ribosomal protein L16-A
- Chain f
- 60S ribosomal protein L33-A
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