IL_6XIR_059
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 6XIR|1|1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_059 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0905
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6XIR|1|1|U|1388
6XIR|1|1|G|1389
6XIR|1|1|A|1390
6XIR|1|1|C|1391
6XIR|1|1|G|1392
6XIR|1|1|A|1393
6XIR|1|1|A|1394
6XIR|1|1|G|1395
*
6XIR|1|1|U|1415
6XIR|1|1|C|1416
6XIR|1|1|G|1417
6XIR|1|1|A|1418
6XIR|1|1|A|1419
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- RPL4A isoform 1
- Chain E
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- RPL32 isoform 1
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