IL_6XIR_062

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6XIR|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_062 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.1856

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6XIR|1|1|U|1501
6XIR|1|1|C|1502
6XIR|1|1|A|1503
6XIR|1|1|A|1504
6XIR|1|1|C|1505
*
6XIR|1|1|G|1513
6XIR|1|1|G|1514
6XIR|1|1|A|1515

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A

Chain l

60S ribosomal protein L39