IL_6XIR_072
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAUCA*UCUUAUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_072 not in the Motif Atlas
- Homologous match to IL_5TBW_072
- Geometric discrepancy: 0.503
- The information below is about IL_5TBW_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39753.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XIR|1|1|U|1702
6XIR|1|1|U|1703
6XIR|1|1|A|1704
6XIR|1|1|U|1705
6XIR|1|1|C|1706
6XIR|1|1|A|1707
*
6XIR|1|1|U|1737
6XIR|1|1|C|1738
6XIR|1|1|U|1739
6XIR|1|1|U|1740
6XIR|1|1|A|1741
6XIR|1|1|U|1742
6XIR|1|1|G|1743
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain g
- 60S ribosomal protein L34-A
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