IL_6XIR_077

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6XIR|1|1|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_077 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.086

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6XIR|1|1|A|1901
6XIR|1|1|G|1902
6XIR|1|1|U|1903
6XIR|1|1|C|1904
6XIR|1|1|G|1905
6XIR|1|1|G|1906
*
6XIR|1|1|C|2333
6XIR|1|1|U|2334
6XIR|1|1|G|2335
6XIR|1|1|U|2336

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain V

60S ribosomal protein L23-A