IL_6XIR_078

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6XIR|1|1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_078 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0903

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6XIR|1|1|C|1918
6XIR|1|1|G|1919
6XIR|1|1|U|1920
6XIR|1|1|A|1921
6XIR|1|1|A|1922
6XIR|1|1|C|1923
*
6XIR|1|1|G|1928
6XIR|1|1|G|1929
6XIR|1|1|A|1930
6XIR|1|1|U|1931
6XIR|1|1|A|1932
6XIR|1|1|A|1933
6XIR|1|1|G|1934

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain p

60S ribosomal protein L43-A