IL_6XIR_084

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6XIR|1|1|A|2242, 6XIR|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_084 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0788

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6XIR|1|1|U|2200
6XIR|1|1|G|2201
*
6XIR|1|1|U|2241
6XIR|1|1|A|2242
6XIR|1|1|A|2243
6XIR|1|1|A|2244

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L2-A