IL_6XIR_102
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGCU*GAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_102 not in the Motif Atlas
- Homologous match to IL_8C3A_111
- Geometric discrepancy: 0.1636
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XIR|1|1|G|2823
6XIR|1|1|G|2824
6XIR|1|1|C|2825
6XIR|1|1|U|2826
*
6XIR|1|1|G|2863
6XIR|1|1|A|2864
6XIR|1|1|U|2865
6XIR|1|1|U|2866
6XIR|1|1|C|2867
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain B
- RPL3 isoform 1
- Chain I
- RPL10 isoform 1
- Chain b
- RPL29 isoform 1
Coloring options: