IL_6XIR_110

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

6XIR|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_110 not in the Motif Atlas

Geometric match to IL_5J7L_342

Geometric discrepancy: 0.163

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6XIR|1|1|U|2891
6XIR|1|1|A|2892
*
6XIR|1|1|U|2909
6XIR|1|1|A|2910
6XIR|1|1|A|2911
6XIR|1|1|G|2912

Current chains

Chain 1

35S ribosomal RNA

Nearby chains