IL_6XIR_117

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6XIR|1|1|U|3056, 6XIR|1|1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_117 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.113

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6XIR|1|1|U|3054
6XIR|1|1|U|3055
6XIR|1|1|U|3056
6XIR|1|1|U|3057
6XIR|1|1|U|3058
6XIR|1|1|G|3059
*
6XIR|1|1|C|3084
6XIR|1|1|G|3085
6XIR|1|1|A|3086
6XIR|1|1|A|3087
6XIR|1|1|G|3088

Current chains

Chain 1

35S ribosomal RNA

Nearby chains

Chain B

RPL3 isoform 1

Chain W

RPL24A isoform 1

Chain d

60S ribosomal protein L31-A