IL_6XIR_182
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_182 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.1506
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6XIR|1|2|G|1041
6XIR|1|2|G|1042
6XIR|1|2|A|1043
6XIR|1|2|U|1044
*
6XIR|1|2|G|1074
6XIR|1|2|C|1075
6XIR|1|2|A|1076
6XIR|1|2|C|1077
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 40S ribosomal protein S13
- Chain AQ
- RPS26B isoform 1
- Chain q
- 40S ribosomal protein S0-A
- Chain r
- RPS1A isoform 1
Coloring options: