IL_6XIR_184

3D structure

PDB id

6XIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XIR_184 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.2251

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6XIR|1|2|G|1111
6XIR|1|2|G|1112
6XIR|1|2|A|1113
6XIR|1|2|G|1114
6XIR|1|2|U|1115
6XIR|1|2|A|1116
6XIR|1|2|U|1117
6XIR|1|2|G|1118
*
6XIR|1|2|U|1129
6XIR|1|2|G|1130
6XIR|1|2|A|1131
6XIR|1|2|A|1132
6XIR|1|2|A|1133
6XIR|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain n

RPL41A isoform 1