IL_6XIR_192
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6XIR|1|2|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_192 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.4482
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6XIR|1|2|C|1280
6XIR|1|2|G|1281
*
6XIR|1|2|C|1426
6XIR|1|2|A|1427
6XIR|1|2|G|1428
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S16-A
- Chain AK
- RPS20 isoform 1
- Chain AT
- RPS29A isoform 1
- Chain AZ
- Transfer RNA; tRNA
- Chain s
- RPS2 isoform 1
- Chain t
- RPS3 isoform 1
Coloring options: