IL_6XIR_214
3D structure
- PDB id
- 6XIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 6XIR|1|3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XIR_214 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.1425
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6XIR|1|3|A|72
6XIR|1|3|C|73
6XIR|1|3|C|74
6XIR|1|3|G|75
6XIR|1|3|A|76
6XIR|1|3|G|77
6XIR|1|3|U|78
6XIR|1|3|A|79
6XIR|1|3|G|80
*
6XIR|1|3|C|100
6XIR|1|3|G|101
6XIR|1|3|A|102
6XIR|1|3|A|103
6XIR|1|3|A|104
6XIR|1|3|C|105
6XIR|1|3|U|106
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 60S ribosomal protein L7-A
- Chain I
- RPL10 isoform 1
- Chain S
- 60S ribosomal protein L20-A
Coloring options: