IL_6XMF_006

3D structure

PDB id

6XMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Cas12g binary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XMF_006 not in the Motif Atlas

Geometric match to IL_7VFT_002

Geometric discrepancy: 0.0829

The information below is about IL_7VFT_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

6XMF|1|C|G|40
6XMF|1|C|A|41
6XMF|1|C|C|42
*
6XMF|1|C|G|49
6XMF|1|C|A|50
6XMF|1|C|C|51

Current chains

Chain C

RNA (116-MER)

Nearby chains

Chain A

CRISPR-Cas