IL_6XQD_312

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6XQD|1|2a|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_312 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0992

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XQD|1|2a|G|662
6XQD|1|2a|A|663
6XQD|1|2a|G|664
6XQD|1|2a|A|665
6XQD|1|2a|G|666
*
6XQD|1|2a|U|740
6XQD|1|2a|G|741
6XQD|1|2a|G|742
6XQD|1|2a|U|743

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2f

30S ribosomal protein S6

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18