IL_6XQD_313

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAUU*AGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_313 not in the Motif Atlas

Geometric match to IL_5J7L_034

Geometric discrepancy: 0.0915

The information below is about IL_5J7L_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6XQD|1|2a|G|673
6XQD|1|2a|G|674
6XQD|1|2a|A|675
6XQD|1|2a|A|676
6XQD|1|2a|U|677
6XQD|1|2a|U|678
*
6XQD|1|2a|A|712
6XQD|1|2a|G|713
6XQD|1|2a|G|714
6XQD|1|2a|A|715
6XQD|1|2a|A|716
6XQD|1|2a|C|717

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2r

30S ribosomal protein S18