IL_6XQD_336

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQD_336 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0946

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6XQD|1|2a|C|1303
6XQD|1|2a|G|1304
6XQD|1|2a|G|1305
6XQD|1|2a|A|1306
6XQD|1|2a|U|1307
6XQD|1|2a|U|1308
*
6XQD|1|2a|A|1329
6XQD|1|2a|U|1330
6XQD|1|2a|G|1331
6XQD|1|2a|A|1332
6XQD|1|2a|A|1333
6XQD|1|2a|G|1334

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx