IL_6XQE_074

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6XQE|1|1A|A|1938, 6XQE|1|1A|U|1944, 6XQE|1|1A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_074 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1294

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6XQE|1|1A|C|1934
6XQE|1|1A|G|1935
6XQE|1|1A|A|1936
6XQE|1|1A|A|1937
6XQE|1|1A|A|1938
6XQE|1|1A|5MU|1939
6XQE|1|1A|U|1940
6XQE|1|1A|C|1941
6XQE|1|1A|5MC|1942
6XQE|1|1A|U|1943
6XQE|1|1A|U|1944
6XQE|1|1A|G|1945
*
6XQE|1|1A|C|1961
6XQE|1|1A|5MC|1962
6XQE|1|1A|U|1963
6XQE|1|1A|G|1964

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA