IL_6XQE_242

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAAG*CGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XQE_242 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.2745

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6XQE|1|2A|G|1850
6XQE|1|2A|U|1851
6XQE|1|2A|C|1852
6XQE|1|2A|A|1853
6XQE|1|2A|A|1854
6XQE|1|2A|G|1855
*
6XQE|1|2A|C|1887
6XQE|1|2A|G|1888
6XQE|1|2A|A|1889
6XQE|1|2A|A|1890
6XQE|1|2A|G|1891
6XQE|1|2A|C|1892

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28