IL_6XUR_002

3D structure

PDB id

6XUR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA dodecamer with a 6-hydrazino-2-aminopurine modified base

Experimental method

X-RAY DIFFRACTION

Resolution

1.1 Å

Loop

Sequence

UUAG*CG(O2Z)A

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: O2Z

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XUR_002 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1875

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6XUR|1|A|U|1007
6XUR|1|A|U|1008
6XUR|1|A|A|1009
6XUR|1|A|G|1010
*
6XUR|1|A|C|1003||||2_556
6XUR|1|A|G|1004||||2_556
6XUR|1|A|O2Z|1005||||2_556
6XUR|1|A|A|1006||||2_556

Current chains

Chain A

RNA dodecamer with a 6-hydrazino-2-aminopurine modified base

Nearby chains