IL_6XYW_001
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- AUGGAUG*CUGAGAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_001 not in the Motif Atlas
- Homologous match to IL_7A0S_001
- Geometric discrepancy: 0.1651
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
6XYW|1|1|A|27
6XYW|1|1|U|28
6XYW|1|1|G|29
6XYW|1|1|G|30
6XYW|1|1|A|31
6XYW|1|1|U|32
6XYW|1|1|G|33
*
6XYW|1|1|C|652
6XYW|1|1|U|653
6XYW|1|1|G|654
6XYW|1|1|A|655
6XYW|1|1|G|656
6XYW|1|1|A|657
6XYW|1|1|U|658
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AB
- At1g26740/T24P13_11
- Chain Aq
- 50S ribosomal protein L20
- Chain As
- AT1G52370 protein
Coloring options: