IL_6XYW_041

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUUAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

6XYW|1|1|C|1291, 6XYW|1|1|A|1293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_041 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.2137

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6XYW|1|1|C|1167
6XYW|1|1|U|1168
6XYW|1|1|U|1169
6XYW|1|1|A|1170
6XYW|1|1|G|1171
6XYW|1|1|U|1172
6XYW|1|1|G|1173
*
6XYW|1|1|C|1289
6XYW|1|1|U|1290
6XYW|1|1|C|1291
6XYW|1|1|A|1292
6XYW|1|1|A|1293
6XYW|1|1|G|1294

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AE

Ribosomal protein

Chain AL

Uncharacterized protein At1g27435/F17L21.30

Chain Aj

At1g01640