IL_6XYW_047

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUGG*CAUC

Length

8 nucleotides

Bulged bases

6XYW|1|1|G|1210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_047 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3601

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6XYW|1|1|G|1208
6XYW|1|1|U|1209
6XYW|1|1|G|1210
6XYW|1|1|G|1211
*
6XYW|1|1|C|1225
6XYW|1|1|A|1226
6XYW|1|1|U|1227
6XYW|1|1|C|1228

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ai

At4g35490

Chain Am

60S ribosomal protein L16, mitochondrial