IL_6XYW_078

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCAAAA*UGGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_078 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3415

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6XYW|1|1|U|2168
6XYW|1|1|C|2169
6XYW|1|1|A|2170
6XYW|1|1|A|2171
6XYW|1|1|A|2172
6XYW|1|1|A|2173
*
6XYW|1|1|U|2197
6XYW|1|1|G|2198
6XYW|1|1|G|2199
6XYW|1|1|A|2200
6XYW|1|1|A|2201
6XYW|1|1|G|2202

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein