IL_6XYW_093

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_093 not in the Motif Atlas

Geometric match to IL_5TBW_085

Geometric discrepancy: 0.2238

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6XYW|1|1|U|2699
6XYW|1|1|C|2700
6XYW|1|1|C|2701
*
6XYW|1|1|G|2712
6XYW|1|1|G|2713

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AC

At3g06320

Chain AD

Ribosomal protein L35

Chain AK

At4g22000

Chain Al

Ribosomal protein L18e/L15 superfamily protein