IL_6XYW_106

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCUAU*AAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_106 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1641

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6XYW|1|1|C|2982
6XYW|1|1|C|2983
6XYW|1|1|U|2984
6XYW|1|1|A|2985
6XYW|1|1|U|2986
*
6XYW|1|1|A|3027
6XYW|1|1|A|3028
6XYW|1|1|G|3029

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain Ak

50S ribosomal protein HLP, mitochondrial

Chain Ap

At1g24240/F3I6_17