IL_6XYW_125

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UAUUAG*CAAUGAUG

Length

14 nucleotides

Bulged bases

6XYW|1|2|U|263, 6XYW|1|2|U|299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_125 not in the Motif Atlas

Geometric match to IL_4V88_402

Geometric discrepancy: 0.2025

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6XYW|1|2|U|261
6XYW|1|2|A|262
6XYW|1|2|U|263
6XYW|1|2|U|264
6XYW|1|2|A|265
6XYW|1|2|G|266
*
6XYW|1|2|C|296
6XYW|1|2|A|297
6XYW|1|2|A|298
6XYW|1|2|U|299
6XYW|1|2|G|300
6XYW|1|2|A|301
6XYW|1|2|U|302
6XYW|1|2|G|303

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bk

Ribosomal protein S12, mitochondrial

Chain Bp

Nucleic acid-binding, OB-fold-like protein