IL_6XYW_139
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UGAAAGUC*GGAAUG
- Length
- 14 nucleotides
- Bulged bases
- 6XYW|1|2|U|627
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_139 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.2213
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6XYW|1|2|U|602
6XYW|1|2|G|603
6XYW|1|2|A|604
6XYW|1|2|A|605
6XYW|1|2|A|606
6XYW|1|2|G|607
6XYW|1|2|U|608
6XYW|1|2|C|609
*
6XYW|1|2|G|623
6XYW|1|2|G|624
6XYW|1|2|A|625
6XYW|1|2|A|626
6XYW|1|2|U|627
6XYW|1|2|G|628
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain BD
- Gb|AAC32909.1
- Chain Bg
- 40S ribosomal protein S15a-5
- Chain Bo
- 30S ribosomal protein S16-2, chloroplastic/mitochondrial
- Chain Bp
- Nucleic acid-binding, OB-fold-like protein
Coloring options: