IL_6XYW_169
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GAAG*CGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 6XYW|1|2|A|1607, 6XYW|1|2|A|1630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_169 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.183
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XYW|1|2|G|1605
6XYW|1|2|A|1606
6XYW|1|2|A|1607
6XYW|1|2|G|1608
*
6XYW|1|2|C|1627
6XYW|1|2|G|1628
6XYW|1|2|A|1629
6XYW|1|2|A|1630
6XYW|1|2|U|1631
6XYW|1|2|C|1632
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain BF
- mS31/mS46
- Chain Bb
- Ribosomal protein S3, mitochondrial
- Chain Bi
- 40S ribosomal protein S10, mitochondrial
- Chain Bm
- At2g34520
- Chain Bx
- 37S ribosomal protein S27
- Chain Bz
- AT3G18240 protein
Coloring options: