IL_6XYW_234

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAGAG*UGGG

Length

9 nucleotides

Bulged bases

6XYW|1|2|A|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_234 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1947

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6XYW|1|2|C|657
6XYW|1|2|A|658
6XYW|1|2|G|659
6XYW|1|2|A|660
6XYW|1|2|G|661
*
6XYW|1|2|U|735
6XYW|1|2|G|736
6XYW|1|2|G|737
6XYW|1|2|G|738

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Be

Translation elongation factor EF1B/ribosomal protein S6 family protein

Chain Bn

At1g15810/F7H2_23

Chain Bq

F10K1.8 protein