IL_6XZ7_039

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6XZ7|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_039 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1257

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6XZ7|1|A|G|1059
6XZ7|1|A|U|1060
6XZ7|1|A|U|1061
6XZ7|1|A|G|1062
*
6XZ7|1|A|C|1076
6XZ7|1|A|A|1077
6XZ7|1|A|U|1078
6XZ7|1|A|C|1079

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11