3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
6XZ7|1|A|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZ7_100 not in the Motif Atlas
Homologous match to IL_5J7L_345
Geometric discrepancy: 0.071
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6XZ7|1|A|C|2636
6XZ7|1|A|U|2637
6XZ7|1|A|G|2638
6XZ7|1|A|A|2639
6XZ7|1|A|G|2640
*
6XZ7|1|A|C|2774
6XZ7|1|A|G|2775
6XZ7|1|A|A|2776
6XZ7|1|A|G|2777
6XZ7|1|A|A|2778
6XZ7|1|A|U|2779
6XZ7|1|A|G|2780
6XZ7|1|A|A|2781
6XZ7|1|A|G|2782

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13

Coloring options:


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