3D structure

PDB id
6XZA (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
6XZA|1|A1|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZA_012 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.1011
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

6XZA|1|A1|G|147
6XZA|1|A1|G|148
6XZA|1|A1|A|149
6XZA|1|A1|U|150
6XZA|1|A1|A|151
6XZA|1|A1|A|152
6XZA|1|A1|C|153
*
6XZA|1|A1|G|168
6XZA|1|A1|C|169
6XZA|1|A1|U|170
6XZA|1|A1|A|171
6XZA|1|A1|A|172
6XZA|1|A1|U|173
6XZA|1|A1|A|174
6XZA|1|A1|C|175

Current chains

Chain A1
16S rRNA

Nearby chains

Chain T1
30S ribosomal protein S20

Coloring options:


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