IL_6XZA_021

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_021 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.0966

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6XZA|1|A1|C|440
6XZA|1|A1|A|441
6XZA|1|A1|G|442
*
6XZA|1|A1|C|492
6XZA|1|A1|A|493
6XZA|1|A1|G|494
6XZA|1|A1|A|495
6XZA|1|A1|A|496
6XZA|1|A1|G|497

Current chains

Chain A1

16S rRNA

Nearby chains

Chain D1

30S ribosomal protein S4