IL_6XZA_033

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

6XZA|1|A1|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_033 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0711

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XZA|1|A1|U|662
6XZA|1|A1|A|663
6XZA|1|A1|G|664
6XZA|1|A1|A|665
6XZA|1|A1|G|666
*
6XZA|1|A1|U|740
6XZA|1|A1|G|741
6XZA|1|A1|G|742
6XZA|1|A1|A|743

Current chains

Chain A1

16S rRNA

Nearby chains

Chain F1

30S ribosomal protein S6

Chain O1

30S ribosomal protein S15

Chain R1

30S ribosomal protein S18