IL_6XZA_042

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_042 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.1203

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6XZA|1|A1|G|953
6XZA|1|A1|G|954
*
6XZA|1|A1|C|1226
6XZA|1|A1|A|1227
6XZA|1|A1|C|1228

Current chains

Chain A1

16S rRNA

Nearby chains

Chain M1

30S ribosomal protein S13

Chain S1

30S ribosomal protein S19

Chain f2

Transfer RNA; tRNA