IL_6XZA_048

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

6XZA|1|A1|C|1200, 6XZA|1|A1|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZA_048 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.0744

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6XZA|1|A1|G|1057
6XZA|1|A1|G|1058
*
6XZA|1|A1|U|1199
6XZA|1|A1|C|1200
6XZA|1|A1|A|1201
6XZA|1|A1|U|1202
6XZA|1|A1|C|1203

Current chains

Chain A1

16S rRNA

Nearby chains

Chain C1

30S ribosomal protein S3

Chain J1

30S ribosomal protein S10

Chain N1

30S ribosomal protein S14